A rash of cases of a rare “black fungus” infection affecting thousands of critically ill Covid patients in India caused alarm last month. Now scientists are warning that other dangerous or even deadly fungal infections have spawned in critically ill coronavirus patients globally, including in the UK.

Fungi are ubiquitous – in soil, water, air, faeces and human skin. Usually, people’s elaborate, adaptive immune systems are enough of a repellent but when that shield is weakened by disease, congenital conditions or age, they are far more vulnerable to microscopic assailants.

When Covid-19 emerged, doctors found that the best tools in their arsenal to fight the virus were steroids, which happen to be immunosuppressants. Wary of secondary bacterial infections in intensive care units, doctors often gave coronavirus patients broad-spectrum antibiotics as a precaution.

But the combination of lungs battered by Covid, impaired immune systems, and both good and bad bacteria wiped out by antibiotics left critically ill patients exposed to moulds and spores.

“It’s an unfortunate perfect storm for these organisms, and we’re seeing it,” said Dr Tom Chiller, the chief of the Mycotic Diseases Branch at the US-based Centers for Disease Control and Prevention (CDC).

Even before the pandemic, rates of the rare and lethal “black fungus” mucormycosis infection in India were estimated to be about 70 times higher than in the rest of the world. With Covid, a fresh epidemic germinated, driven in part by liberal steroid use in hospitals and a high proportion of susceptible patients with uncontrolled diabetes.

Scientists now say concerning reports of other fungal infections, caused by pathogens including Aspergillus and Candida auris, have emerged in hospitalised Covid patients. In particular, the common fungal infection aspergillosis, often seen in combination with the flu, has been observed in critically ill Covid patients globally, from the US to the UK, France, Pakistan and India.

A doctor checks on a recovered Covid patient earlier this month prior to surgery to remove mucormycosis or black fungus at a hospital in Ghaziabad, India.
A doctor checks on a recovered Covid patient earlier this month prior to surgery to remove mucormycosis or black fungus at a hospital in Ghaziabad, India. Photograph: Anadolu Agency/Getty Images

A recent meta-review of 19 observational hospitalised Covid patient studies from various countries showed the overall incidence of Covid-associated pulmonary aspergillosis was 13.5% from 1,421 patients, with a range of 2.5% to 35%. Despite the widespread use of antifungals, nearly half of those infected died.

“Essentially, the more damage there is in the lung from a virus, the more likely you are to get a fungal infection,” said Dr Darius Armstrong-James, a clinical senior lecturer in respiratory fungal diseases at Imperial College London. “And the problem with fungal infections is that they’re much more lethal than bacterial infections. They’re difficult to treat, difficult to diagnose and cause a lot more mortality.”

Armstrong-James, who also leads the fungal diseases unit at the Royal Brompton hospital, estimated that roughly 10% to 15% of critically ill Covid patients have caught aspergillosis in hospitals in the UK, based on his own work as a clinician.

Diagnosing aspergillosis is difficult in Covid cases because it involves sampling fluid from the lungs, which is routine in Europe and North America but not elsewhere, said David Denning, a professor of infectious diseases and global health at the University of Manchester.

Patients on a Covid ward in a Hyderabad hospital on 21 May.
‘Black fungus’ disease linked to Covid spreads across India

“Some people won’t want to take that fluid, because there’s a risk of the [virus that causes] Covid … getting into the air in the intensive care unit and infecting the people doing the procedure. There’s a reluctance to make a diagnosis.”

“Mucormycosis is very visible … the patients look terrible, they’ve got these black areas on their face, they’re losing their eye … it needs a big-time surgery, it looks dreadful,” he said. “A patient with aspergillosis is just sick on a ventilator, and they’ve already got a bad lung disease with Covid. And if they then die, then it’s all attributed to Covid.”

Given these hurdles, undercounting of aspergillosis cases was “extremely likely”, he added. He said the trend of these infections in hospitalised Covid patients was grave enough to justify administering antifungal treatments prophylactically, as doctors do with antibiotics. Research to assess the feasibility of that approach is ongoing.

According to Chiller, roughly half of those infected with mucormycosis tend to die – and aspergillosis can be just as deadly, especially in intensive care patients with Covid. “The important thing is to think fungus,” he said. “If you don’t think it, you’re not going to diagnose it, you’re not going to treat it, you’re not going to save lives.”

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White House to send ‘surge teams’ to delta variant hot spots

By Nathaniel Weixel

The White House is readying COVID-19 “surge teams” to send to communities with low vaccination rates to help combat the rapidly spreading delta variant of the coronavirus, officials announced Thursday.

The teams will work with local public health authorities to conduct contact tracing, and will distribute supplies as needed or requested by states, such as therapeutics and additional tests.

The teams will also help augment staffing at local vaccination sites.

White House coronavirus coordinator Jeff Zients said the administration will also increase advertisements about the benefits of vaccinations in hot spot communities.

The federal government has relied on teams from agencies including the Department of Health and Human Services and the Federal Emergency Management Authority to help bolster vaccine distribution since Biden took office, with a focus on underserved communities.

Centers for Disease Control and Prevention (CDC) Director Rochelle Walensky warned that the highly contagious delta variant is the most serious risk to unvaccinated communities. She said an estimated 25 percent of all infections nationwide are attributed to the delta variant which was originally found in India.

“Looking across the country we have made incredible progress towards ending the pandemic,” Walensky said. “However, looking state by state and county by county, it is clear that communities where people remain unvaccinated are communities that remain vulnerable.”

Walensky said there are about 1,000 counties in the country that have vaccination coverage of less than 30 percent, primarily in the south, east and Midwest.

“In some of these areas we are already seeing increasing rates of disease. As the delta variant continues to spread across the country, we expect to see increased transmissions in these communities, unless we can vaccinate more people,” Walensky said.

Despite the rise of the delta variant, health officials reiterated that the vaccines authorized for use in the U.S. work and offer protection from severe illness and death.

Officials have urged unvaccinated people to wear masks, especially indoors, but said they have no intention of changing the CDC’s recommendation that vaccinated people do not need masks.

Walensky said initial data from the past six months has shown 99.5 percent of deaths from COVID-19 in a select group of states occurred in unvaccinated people.

“Any suffering or death from COVID-19 is tragic. With vaccines available across the country, the suffering and loss we are now seeing is nearly entirely avoidable,” Walensky said.

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WORLD STATS

Coronavirus Cases:

183,440,159

Deaths:

3,971,870

Recovered:

167,943,568
Highlighted in green
= all cases have recovered from the infection
Highlighted in grey
= all cases have had an outcome (there are no active cases)

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July 2 (GMT)

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